Projects

scIB Benchmarking atlas-level data integration in single-cell genomics

This repository contains the code for the scib package used in our benchmarking study for data integration tools.

iHCA An Integration Pipeline for the Human Cell Atlas

There are multiple standalone modules that can be run independently or combined: data loading, exploration, preprocessing, label harmonization, integration, metrics.

Current best practices in single-cell RNA-seq analysis: a tutorial

Scripts for “Current best-practices in single-cell RNA-seq: a tutorial”

Mapping your data to the Human Lung Cell Atlas

This repository enables you to map your own single-cell or single-nucleus data to the Human Lung Cell Atlas.